Nucleic acid molecules coding for debranching enzymes from maize

ABSTRACT

Nucleic acid molecules are described, which encode debranching enzymes from  maize , as well as transgenic plant cells and plants in which an amylopectin with modified properties is synthesized due to the expression of a debranching enzyme from  maize  or due to the inhibition of such an endogeneous debranching enzyme activity.

“This application is a DIV of U.S. application Ser. No. 09/148,680,filed Sep. 4, 1998 now U.S. Pat. No. 6,255,561, which is a CON ofPCT/EP97/01141, filed Mar. 6, 1997.”

The present invention relates to nucleic acid molecules encodingproteins from maize with the enzymatic activity of a debranching enzyme(R enzyme). The invention further relates to transgenic plants and plantcells, in which an amylopectin with an altered degree of branching issynthesized due to the expression of an additional debranching enzymeactivity from maize or due to the inhibition of an endogeneousdebranching enzyme activity. The invention also relates to the starchobtainable from said transgenic plant cells and plants.

Starch plays an important role as storage substance in a multitude ofplants and also as a regenerative, industrially usable raw material andhas gained increasing significance. For the industrial use of starch itis necessary that it meets the demands of the processing industry withrespect to its structure, form and/or other physico-chemical parameters.In order to enable the use in as many areas as possible it isfurthermore necessary to achieve a large variety of substances.

The polysaccharide starch is made up of chemically homogeneous basiccomponents, namely the glucose molecules. However, it constitutes ahighly complex mixture of various types of molecules which differ fromeach other in their degree of polymerization and in the degree ofbranching. One differentiates between amylose-starch, a basicallynon-branched polymer made up of α-1,4-glycosidically branched glucosemolecules, and amylopectin-starch, a branched polymer, in which thebranching results from additional α-1,6-glycosidic interlinkings.

In plants used typically for the production of starch, such as maize orpotato, the synthesized starch consists of approximately 25%amylose-starch and of about 75% amylopectin-starch. In the case ofmaize, for example, a further branched polysaccharide, apart fromamylopectin, occurs, namely the so-called phytoglycogen which differsfrom amylopectin by exhibiting a higher degree of branching anddifferent solubility (see e.g. Lee et al., Arch. Biochem. Biophys. 143(1971), 365-374; Pan and Nelson, Plant Physiol. 74 (1984), 324-328). Inthe scope of the present application the term amylopectin is used insuch a way as to comprise the phytoglycogen.

With respect to the homogeneity of the basic component starch for itsuse in the industrial area, starch-producing plants are needed whichcontain, for example, only the component amylopectin or only thecomponent amylose. For a number of other uses plants are needed thatsynthesize amylopectin types with different degrees of branchings.

Such plants may for example be obtained by breeding or by means ofmutagenesis techniques. It is known for various plant species, such asfor maize, that by means of mutagenesis varieties may be produced inwhich only amylopectin is formed. Also in the case of potato a genotypewas produced from a haploid line by means of chemical mutagenesis. Saidgenotype does not form amylose (Hovenkamp-Hermelink, Theor. Appl. Genet.75 (1987), 217-221).

From Visser et al. (Mol. Gen. Genet. 225 (1991), 289) and WO 92/11376 itis furthermore known that by means of an antisense-inhibition of thegene of the granule-bound starch synthase in potato varieties may beproduced that mainly synthesize pure amylopectin. Moreover, DNAsequences are known from WO 92/14827 that encode a branching enzyme (Qenzyme), that introduces α-1,6 branchings into amylopectin starch. Bymeans of these DNA sequences it should be possible to produce transgenicplants in which the amylose/amylopectin ratio of the starch is altered.

For a further targeted modification of the degree of branching of starchsynthesized in plants by means of recombinant DNA techniques, it isstill necessary to identify DNA sequences that encode enzymesparticipating in the starch metabolism, particularly in the branching ofstarch molecules.

Apart from the Q enzymes that introduce branchings into starchmolecules, enzymes occur in plants which are capable of dissolvingbranchings. These enzymes are called debranching enzymes and areclassified as three groups according to their substrate specifity:

(a) Pullulanases which also, apart from pullulan, use amylopectin as asubstrate, occur in microorganisms, e.g. Klebsiella, and in plants. Inplants these enzymes are also called R enzymes.

(b) Isoamylases, which do not use pullulan, but glycogen and amylopectinas a substrate, also occur in microorganisms and plants. Isoamylaseswere described for example in the case of maize (Manners & Rowe,Carbohydr. Res. 9 (1969), 107) and potato (Ishizaki et al., Agric. Biol.Chem. 47 (1983), 771-779).

(c) Amylo-1,6-glucosidases were described in the case of mammals andyeast; as a substrate, they make use of dextrines.

In the case of sugar beet, Li et al. (Plant Physiol. 98 (1992),1277-1284) could only prove the occurrence of one debranching enzyme ofthe pullulanase type, apart from five endo- and two exoamylases. Thisenzyme having a size of approximately 100 kD and an optimum pH value of5.5 is located within the chloroplasts. A debranching enzyme usingpullulan as a substrate was also described for spinach. The debranchingenzyme from spinach as well as that from sugar beet exhibit a fivefoldlower activity in a reaction with amylopectin as substrate when comparedto a reaction with pullulan as a substrate (Ludwig et al., PlantPhysiol. 74 (1984), 856-861; Li et al., Plant Physiol. 98 (1992),1277-1284).

In the case of the agriculturally significant starch-storing culturedplant potato, the activity of a debranching enzyme was examined byHobson et al. (J. Chem. Soc., (1951), 1451). It was proven that therespective enzyme, contrary to the Q enzyme, does not exhibit anyactivities leading to an elongation of the polysaccharide chain, butmerely hydrolyses α-1,6-glycosidic bonds. So far, however, the enzymecould not be characterized in more detail.

In the case of potato, methods for the purification of the debranchingenzyme as well as partial peptide sequences of the purified protein havealready been proposed (WO 95/04826).

The purification of a debranching enzyme and the isolation of acorresponding cDNA has by now been described for spinach (Renz et al.,Plant Physiol. 108 (1995), 1342).

For the most significant starch-delivering plant, namely maize, so faronly the existence of one debranching enzyme was described in the priorart. Due to its substrate specificity, this debranching enzyme isclassified as an isoamylase (see e.g. Hannah et al., ScientiaHorticulturae 55 (1993), 177-197 or Garwood (1984) in Starch Chemistryand Technology, Whistler, R. L., BeMiller, J. N., Puschall, E. F.(eds.), Academic Press San Diego, New York, Boston, 25-86). Thecorresponding mutant was designated su (sugary). The gene of the sugarylocus was cloned recently (see James et al., Plant Cell 7 (1995),417-429). So far no other gene locus apart from the sugary locus isknown for maize, which encodes a protein with debranching enzymeactivity. Thus, there is so far no indication as to the existence offurther types of debranching enzymes from maize. If transgenic maizeplants are to be produced which no longer exhibit any debranching enzymeactivity, e.g. in order to achieve a modification of the degree ofbranching of the amylopectin starch, it is necessary to identify alldebranching enzymes occurring in maize and to isolate the correspondinggenes or cDNA sequences.

Therefore, the technical problem underlying the present invention is toidentify further debranching enzymes possibly occurring in maize and toisolate corresponding nucleic acid molecules encoding these enzymes.

This problem is solved by the provision of the embodiments as defined inthe claims.

Thus, the present invention relates to nucleic acid molecules encodingproteins with the biological activity of a debranching enzyme from maizeor a biologically active fragment thereof, wherein such nucleic acidmolecules preferably encode a debranching enzyme from maize thatexhibits the amino acid sequence depicted in SEQ ID No. 2. In aparticularly preferred embodiment such a nucleic acid molecule comprisesthe nucleotide sequence depicted under SEQ ID No. 1, in particular thecoding region, or a corresponding ribonucleotide sequence.

The present invention also relates to nucleic acid molecules encodingproteins with the biological activity of a debranching enzyme from maizeor biologically active fragments thereof and hybridizing to one of theabove-described nucleic acid molecules.

Furthermore, the present invention relates to nucleic acid molecules thesequences of which differ from the sequences of the above-describednucleic acid molecules due to the degeneracy of the genetic code andwhich encode a protein exhibiting the biological activity of adebranching enzyme from maize.

The invention also relates to nucleic acid molecules the sequence ofwhich is complementary to the complete or partial sequence of theabove-described nucleic acid molecule.

In the scope of the present invention the term “hybridization” signifieshybridization under conventional hybridizing conditions, preferablyunder stringent conditions, as described for example in Sambrook et al.,Molecular Cloning, A Laboratory Manual, 2nd Edition (1989) Cold SpringHarbor Laboratory Press, Cold Spring Harbor, N.Y.).

Nucleic acid molecules hybridizing to the nucleic acid molecules of theinvention may basically be derived from any desired type of maize plant.

Nucleic acid molecules hybridizing to the molecules of the invention mayfor example be isolated from genomic or cDNA libraries.

The identification and isolation of such nucleic acid molecules frommaize plants may take place by using the molecules of the invention orparts of these molecules or, as the case may be, the reverse complementsof these molecules, e.g. by hybridization according to standard methods(see e.g. Sambrook et al., 1989, Molecular Cloning, A Laboratory Manual,2nd Edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor,N.Y.).

As a probe for hybridization e.g. nucleic acid molecules may be usedwhich exactly or basically contain the nucleotide sequence indicatedunder Seq ID No. 1 or parts thereof. The fragments used as hybridizationprobe may also be synthetic fragments which were produced by means ofthe conventional synthesizing methods and the sequence of which isbasically identical to that of a nucleic acid molecule of the invention.After identifying and isolating the genes hybridizing to the nucleicacid sequences of the invention, the sequence has to be determined andthe properties of the proteins encoded by this sequence have to beanalyzed.

The molecules hybridizing to the nucleic acid molecules of the inventionalso comprise fragments, derivatives and allelic variants of theabove-described DNA molecules which encode a debranching enzyme frommaize or a biologically, i.e. enzymatically active fragment thereof. Inthis context, fragments are defined as parts of the nucleic acidmolecules, which are long enough in order to encode a polypeptide withthe enzymatic activity of a debranching enzyme from maize. In thiscontext, the term derivative means that the sequences of these moleculesdiffer from the sequences of the above-mentioned nucleic acid moleculesat one or more positions and that they exhibit a high degree of homologyto these sequences. In this regard, homology means a sequence identityof at least 40%, in particular an identity of at least 60%, preferablyof more than 80% and still more preferably a sequence identity of morethan 90%. The deviations occurring when compared to the above-describednucleic acid molecules might have been caused by deletion, addition,substitution, insertion or recombination.

Moreover, homology means that the respective nucleic acid molecules orthe proteins they encode are functionally and/or structurallyequivalent. The nucleic acid molecules which are homologous to theabove-described molecules and represent derivatives of these molecules,are generally variations of these molecules, that constitutemodifications exerting the same biological function. These variationsmay be naturally occurring variations, for example sequences derivedfrom other organisms, or mutations, wherein these mutations may haveoccurred naturally or they may have been introduced by means of aspecific mutagenesis. Moreover the variations may be syntheticallyproduced sequences. The allelic variants may be naturally occurring aswell as synthetically produced variants or variants produced byrecombinant DNA techniques.

The proteins encoded by the various variants of the nucleic acidmolecules according to the invention exhibit certain commoncharacteristics. Enzyme activity, molecular weight, immunologicreactivity, conformation etc. may belong to these characteristics aswell as physical properties such as the mobility in gel electrophoresis,chromatographic characteristics, sedimentation coefficients, solubility,spectroscopic properties, stability; pH-optimum, temperature-optimumetc.

The enzymatic activity of the debranching enzyme may for example beshown by means of a staining test, as described in WO 95/04826. Thistest is based on the fact that a protein with a starch-modifyingactivity may be shown by separating protein extracts, for example frommaize kernel, on non-denaturing amylopectin-containing polyacrylamidegels (PAAG) and the gel is subsequently, after incubation with asuitable buffer, subjected to iodine staining. While unbranched amylosetreated with iodine shows a blue staining, amylopectine exhibits areddish purple staining. In amylopectin-containing polyacrylamide gelswhich turn reddish purple when treated with iodine, the color of the geltends to turn into blue at positions where a debranching activity islocalized, since the branchings of the purple-staining amylopectin aredissolved by the debranching enzyme.

Alternatively, the debranching enzyme activity may be shown by means ofthe DNSS test (see Ludwig et al., Plant Physiol. 74 (1984), 856-861).

The nucleic acid molecules of the invention may be any desired nucleicacid molecules, in particular DNA or RNA molecules, such as cDNA,genomic DNA, mRNA etc. They may be naturally occurring molecules or theymay be produced by means of recombinant DNA or chemical techniques.

The nucleic acid molecules according to the present invention encode aso far unknown protein from maize with the enzymatic activity of adebranching enzyme. So far only one locus encoding a protein withdebranching enzyme activity has been described for maize (James et al.,loc. cit.). There was no indication in the prior art that furtherdebranching-enzyme-encoding genes exist in maize. Homology comparisonsof the nucleic acid molecules of the invention with those described inJames et al. (loc. cit.) have shown that these sequences do not exhibitany significant homology and would not hybridize to each other. Thus,the molecules of the invention encode a novel type of debranchingenzymes from maize. By means of these molecules it is now possible tospecifically interfere with the starch metabolism of maize and otherstarch-storing plants and thus to enable the synthesis of a starchmodified in its chemical or physical properties. This may be carried outby over-expressing the nucleic acid molecules of the invention in anydesired, preferably starch-storing plants or by reducing the debranchingenzyme activity in maize plants by making use of the nucleic acidsequences of the invention, for example by antisense, ribozyme orcosuppression effects.

Furthermore, the present invention relates to nucleic acid moleculeswith a length of at least 15 base pairs, which specifically hybridize tothe nucleic acid molecules of the invention. In this context,specifically hybridizing means that these molecules hybridize to nucleicacid molecules encoding the novel debranching enzymes from maize,however, not to nucleic acid molecules encoding other proteins. In thisregard, hybridizing preferably means hybridization under stringentconditions (see above). The invention particularly relates to suchnucleic acid molecules that hybridize to transcripts of the nucleic acidmolecules of the invention, thereby preventing their translation. Theseare preferably RNA molecules complementary to the transcripts.

Furthermore, the invention relates to vectors, especially plasmids,cosmids, viruses, bacteriophages and other vectors common in geneticengineering, which contain the above-mentioned nucleic acid molecules ofthe invention.

In a preferred embodiment the nucleic acid molecules contained in thevectors are linked to regulatory elements that ensure the transcriptionand translation in prokaryotic and eukaryotic cells.

In a further embodiment the invention relates to host cells, inparticular prokaryotic or eukaryotic cells, which have been transformedby an above-mentioned nucleic acid molecule of the invention or by avector of the invention, as well as to cells derived from suchtransformed cells and containing the nucleic acid molecules or vectorsof the invention. The host cells may be bacterial or fungal cells, aswell as plant or animal cells.

The invention also relates to proteins with the biological activity of adebranching enzyme from maize which are encoded by the nucleic acidmolecules of the invention, or to biologically active fragments thereof.

Furthermore, the present invention relates to methods for the productionof a plant protein with the biological activity of a debranching enzymefrom maize or a biologically active fragment thereof, wherein host cellsof the invention are cultivated under suitable conditions and whereinthe protein is isolated from the culture, i.e. from the cultivated cellsand/or the culture medium.

By the provision of the nucleic acid molecules according to the presentinvention it is now possible to modify plant cells by means ofrecombinant DNA techniques in such a way that they exhibit a novel orincreased debranching enzyme activity from maize when compared towildtype cells, i.e. corresponding untransformed cells. Maize cells ormaize plants may particularly be modified in such a way that theyexhibit a reduced debranching enzyme activity when compared to wildtypecells or plants.

Thus, in a preferred embodiment the host cells of the invention aretransgenic plant cells which due to the presence and expression of anintroduced nucleic acid molecule of the invention either exhibit a novelor an increased debranching enzyme activity when compared tountransformed cells. Such transgenic plant cells differ fromuntransformed cells in that the introduced nucleic acid molecule iseither heterologous to the transformed cell, i.e. derived from a cellwith a different genomic background, or in that the introduced nucleicacid molecule, if it is homologous to transformed plant species, islocalized at a position in the genome where it does not naturally occurin non-transformed cells. The introduced nucleic acid molecule mayeither be subjected to the control of a natural promoter or be linkedwith regulatory elements of foreign genes.

Transgenic plants containing the above-described transgenic plant cellsare also the subject matter of the present invention.

The plant which is transformed with the nucleic acid molecules of theinvention and in which a debranching enzyme from maize is synthesizeddue to the introduction of such a molecule may principally be anydesired kind of plant. It is preferably a monocotyledonous ordicotyledonous useful plant, in particular a starch storing plant, suchas cereals, Leguminosae, potatoes or cassava.

The cereals are in particular monocotyledonous plants belonging to thePoales order, in particular of the family of the Poaceae. Examplesthereof are plants belonging to the genuses Avena (oats), Triticum(wheat), Secale (rye), Hordeum (barley), Oryza (rice), Panicum,Pennisetum, Setaria, Sorghum (millet), Zea (maize) etc., whereby plantsfrom the Zea mays species (maize) are particularly preferred.Starch-storing Leguminosae are e.g. some types of the genus Pisum (e.g.Pisum sativum), Vicia (e.g. Vicia faba), Cicer (e.g. Cicer arietinum),Lens (e.g. Lens culinaris), Phaseolus (e.g. Phaseolus vulgaris andPhaseolus coccineus), etc.

The expression of a novel or additional debranching enzyme activity frommaize in the transgenic plant cells and plants of the inventioninfluences the degree of branching of the amylopectin synthesized in thecells and plants. Therefore, a starch synthesized in these plantsexhibits modified physical and/or chemical properties when compared tostarch from wildtype plants. Thus, the invention also relates to thestarch obtained from the transgenic plant cells and plants.

Furthermore, the present invention relates to propagation material ofthe transgenic plants of the invention, such as seeds, fruits, cuttings,tubers, rootstocks etc., wherein this propagation material contains theabove-described transgenic plant cells. In the case of maize plants thepropagation material are preferably maize kernels.

Furthermore, the present invention relates to transgenic plant cellsfrom maize in which the activity of the debranching enzyme of theinvention is reduced due to the inhibition of the transcription ortranslation of endogeneous nucleic acid molecules encoding a debranchingenzyme of the invention. This is preferably achieved by expressing anucleic acid molecule of the invention or a part thereof in thecorresponding plant cells in antisense orientation and by the fact thatdue to the antisense effect the described debranching enzyme activity isreduced. A further possibility in order to reduce the debranching enzymeactivity in plant cells is to express suitable ribozymes thatspecifically cleave transcripts of the DNA molecules of the invention.The production of such ribozymes by means of the DNA molecules of theinvention is known to the skilled person. It is also possible to expressmolecules which exert an antisense effect in combination with a ribozymeeffect. Alternatively, the debranching enzyme activity in the plantcells may be reduced by means of a cosuppression effect. The method isknown to the skilled person and has e.g. been described in Jorgensen(Trends Biotechnol. 8 (1990), 340-344), Niebel et al. (Curr. Top.Microbiol. Immunol. 197 (1995), 91-103), Flavell et al. (Curr. Top.Microbiol. Immunol. 197 (1995), 43-46), Palaqui and Vaucheret (Plant.Mol. Biol. 29 (1995), 149-159), Vaucheret et al. (Mol. Gen. Genet. 248(1995), 311-317), de Borne et al. (Mol. Gen. Genet. 243 (1994), 613-621)and other sources.

The invention further relates to transgenic maize plants containing theabove-described transgenic plant cells with reduced debranching enzymeactivity.

When compared to non-transformed plants, the amylopectin starch of thetransgenic cells and plants exhibits a modified degree of branching dueto the reduced debranching enzyme activity. Therefore, the modifiedstarch obtainable from the transgenic cells or plants is also thesubject matter of the present invention.

The invention also relates to propagation material of theabove-described transgenic plants, in particular to seeds, whereby saidmaterial contains the above-mentioned transgenic plant cells.

Transgenic plant cells forming an amylopectin starch with a modifieddegree of branching in comparison to amylopectin starch synthesized inwildtype plants due to the expression of a novel or additionaldebranching enzyme activity, may for example be produced by a methodcomprising the following steps:

(a) Production of an expression cassette comprising the following DNAsequences:

(i) a promoter ensuring the transcription in plant cells;

(ii) at least one nucleic acid sequence of the invention which encodes aprotein with the enzymatic activity of a debranching enzyme or abiologically active fragment thereof and which is coupled to the 3′-endof the promoter in sense-orientation; and

(iii) optionally, a termination signal for the termination oftranscription and the addition of a poly-A-tail to the developingtranscript, which is coupled to the 3′-end of the coding region; and

(b) transforming plant cells with the expression cassette produced instep (a).

Transgenic maize plant cells forming an amylopectin starch with areduced degree of branching in comparison to amylopectin starchsynthesized in wildtype plants due to the reduction of the describeddebranching enzyme activity, may for example be produced by a methodcomprising the following steps:

(a) Production of an expression cassette comprising the following DNAsequences:

(i) a promoter ensuring the transcription in plant cells;

(ii) at least one nucleic acid sequence of the invention which encodes aprotein with the enzymatic activity of a debranching enzyme or abiologically active part thereof and which is coupled to the 3′-end ofthe promoter in antisense-orientation; and

(iii) optionally, a termination signal for the termination oftranscription and the addition of a poly-A-tail to the developingtranscript, which is coupled to the 3′-end of the coding region; and

(b) transforming plant cells with the expression cassette produced instep (a).

Basically every promoter functional in the plants selected fortransformation may be used as the promoter mentioned under (i). Thepromoter may be homologous or heterologous with respect to the usedplant species. Use may, for example, be made of the 35S promoter of thecauliflower mosaic virus (Odell et al., Nature 313 (1985), 810-812)which ensures a constitutive expression in all plant tissues and also ofthe promoter construct described in WO/9401571. Another example are thepromoters of the polyubiquitin genes from maize (Christensen et al.,Plant Mol. Biol. 18 (1992) 675-689). However, use may also be made ofpromoters which are only activated at a point of time determined byexogeneous factors (such as in WO/9307279). In this regard, promoters ofheat-shock proteins allowing for simple induction may be of particularinterest. Furthermore, promoters may be used that lead to the expressionof downstream sequences in a particular tissue of the plant (see e.g.Stockhaus et al., EMBO J. 8 (1989), 2245-2251). Promoters which areactive in the starch-storing parts of the plant to be transformed arepreferably used. In the case of maize these parts are the maize kernels,in the case of potatoes the tubers. In order to overexpress the nucleicacid molecules of the invention in potatoes, the tuber-specificB33-promoter (Rocha-Sosa et al., EMBO J. 8 (1989), 23-29) may forexample be used.

Seed-specific promoters have already been described for various plantspecies, such as the USP promoter from Vicia faba which ensures aseed-specific expression in V. faba and other plants (Fiedler et al.,Plant Mol. Biol. 22 (1993), 669-679; Baumlein et al., Mol. Gen. Genet.225 (1991), 459-467). In the case of maize , for example, promoters ofthe zein genes ensure a specific expression within the endosperm of themaize kernels (Pedersen et al., Cell 29 (1982), 1015-1026; Quattrocchioet al., Plant Mol. Biol. 15 (1990), 81-93).

In the case that the nucleic acid sequence mentioned under process step(a)(ii), which encodes a protein with the enzymatic activity of adebranching enzyme from maize, is linked to the promoter insense-orientation, this nucleic acid sequence may be of native orhomologous origin as well as of foreign or heterologous origin withrespect to the plant species to be transformed, i.e. maize plants aswell as any desired other plants (preferably the above-mentioned,starch-storing plants) may be transformed with the described expressioncassette.

The synthesized protein may in principle be located in any desiredcompartment within the plant cell. Plant debranching enzymes aregenerally located within the plastids and therefore possess a signalsequence for the translocation into these organelles. In order toachieve localization within another compartment, the DNA sequenceencoding this signal sequence must be deleted and the coding region hasto be linked to DNA sequences which ensure localization in therespective compartment. Such sequences are known (see e.g. Braun et al.,EMBO J. 11 (1992), 3219-3227; Wolter et al., Proc. Natl. Acad. Sci. USA85 (1988), 846-850; Sonnewald et al., Plant J. 1 (1991), 95-106).

In case that the nucleic acid sequence mentioned under process step(a)(ii), which encodes a protein from maize with the enzymatic activityof a debranching enzyme, is linked to the promoter inantisense-orientation, it is preferably a nucleic acid sequence ofhomologous origin with respect to the plant species to be transformed.However, also nucleic acid sequences may be used which exhibit a highdegree of homology to endogeneously present debranching enzyme genes, inparticular homologies of more than 80%, preferably homologies of between90% and 100% and most preferably homologies of more than 95%.

Sequences with a minimum length of 15 bp may be used. Even when usingshorter sequences, an inhibiting effect cannot be excluded. Longersequences ranging between 100 to 500 base pairs are preferably used; foran efficient antisense inhibition, sequences with a length of more than500 base pairs are used. Usually, use is made of sequences that areshorter than 5000 base pairs, preferably sequences that are shorter than2500 base pairs.

Termination signals for the transcription in plant cells are describedand may be interchanged as desired. For example, use can be made of thetermination sequence of the octopinsynthase gene from Agrobacteriumtumefaciens.

The transfer of the expression cassette constructed according to processstep (a) is preferably carried out by using plasmids, in particular bymeans of plasmids ensuring a stable integration of the expressioncassette into the plant genome.

The above-described method for overexpressing a novel debranching enzymefrom maize may principally be used for all plant species. In thiscontext, monocotyledonous and dicotyledonous plants and in particularthe above-mentioned starch-storing plants are of interest. Theabove-described method for reducing the debranching enzyme activity ispreferably used for monocotyledonous plants, in particular for maize.

Due to the introduction of an expression cassette constructed accordingto the above-described methods, an RNA is formed within the transformedplant cells. If the nucleic acid sequence encoding a debranching enzymefrom maize is linked to the promoter in sense-orientation in theexpression cassette, an mRNA is synthesized which may serve as a matrixfor the synthesis of an additional or novel debranching enzyme frommaize in the plant cells. As a consequence thereof, these cells exhibitan activity or, as the case may be, increased activity of thedebranching enzyme from maize, which leads to a modification of thedegree of branching of the amylopectin formed in the cells. Thereby, astarch is made accessible which in comparison to naturally occuringstarch is characterized by a more clearly ordered structure as well asby an increased homogeneity. This may, among other things, favorablyinfluence the film forming properties.

If, however, the nucleic acid sequence encoding a debranching enzymefrom maize is linked to the promoter in antisense-orientation, anantisense-RNA is synthesized within the transgenic plant cellsinhibiting the expression of endogeneous debranching enzyme genes. As aconsequence, these cells exhibit a reduced activity of the noveldebranching enzyme from maize, which leads to the synthesis of amodified starch. By means of the antisense technique it is possible toproduce plants in which the expression of an endogeneous debranchingenzyme gene in maize is inhibited to different degrees within the rangeof 0% to 100%. This enables in particular the production of maize plantssynthesizing amylopectin starch with most various variations of thedegree of branching. This constitutes an advantage with regard toconventional breeding and mutagenesis techniques in which a lot of timeand costs are required in order to provide such a variety. Highlybranched amylopectin has a particularly large surface and is thereforeparticularly suitable as a copolymer. A high degree of branchingfurthermore leads to an improvement of the amylopectin's solubility inwater. This property is very advantageous for certain technicalapplications.

Maize is particularly suitable for the production of modifiedamylopectin by using the nucleic acid molecules of the inventionencoding debranching enzymes. The application of the invention is,however, not limited to this plant species. Any desired other plantspecies may be used for overexpression.

The modified starch synthesized in the transgenic plants may be isolatedfrom the plants or from the plant cells by means of conventional methodsand may be used for the production of foodstuffs and industrial productsafter purification.

The starch according to the invention can be modified by the personskilled in the art by known methods and can be used in modified orunmodified form for different uses in the food or non-food industry.

Basically, the uses of starch can be subdivided into two major fields.One field comprises the hydrolysis products of starch and the so callednative starches. The hydrolysis products essentially comprise glucoseand glucans components obtained by enzymatic or chemical processes. Theycan be used for further processes, such as fermentation and chemicalmodifications. In this context, it might be of importance that thehydrolysis process can be carried out simply and inexpensively.Currently, it is carried out substantially enzymatically usingamyloglucosidase. It is thinkable that costs might be reduced by usinglower amounts of enzymes for hydrolysis due to changes in the starchstructure, e.g. increasing the surface of the grain, improveddigestibility due to less branching or a steric structure, which limitsthe accessibility for the used enzymes.

The use of the so-called native starch which is used because of itspolymer structure can be subdivided into two further areas:

1. Use in Foodstuffs

Starch is a classic additive for various foodstuffs, in which itessentially serves the purpose of binding aqueous additives and/orcauses an increased viscosity or an increased gel formation. Importantcharacteristic properties are flowing and sorption behavior, swellingand pastification temperature, viscosity and thickening performance,solubility of the starch, transparency and paste structure, heat, shearand acid resistance, tendency to retrogradation, capability of filmformation, resistance to freezing/thawing, digestibility as well as thecapability of complex formation with e.g. inorganic or organic ions.

2. Use in Non-Foodstuffs

The other major field of application is the use of starch as an adjuvantin various production processes or as an additive in technical products.The major fields of application for the use of starch as an adjuvantare, first of all, the paper and cardboard industry. In this field, thestarch is mainly used for retention (holding back solids), for sizingfiller and fine particles, as solidifying substance and for dehydration.In addition, the advantageous properties of starch with regard tostiffness, hardness, sound, grip, gloss, smoothness, tear strength aswell as the surfaces are utilized.

2.1 Paper and Cardboard Industry

Within the paper production process, a differentiation can be madebetween four fields of application, namely surface, coating, mass andspraying.

The requirements on starch with regard to surface treatment areessentially a high degree of brightness, corresponding viscosity, highviscosity stability, good film formation as well as low formation ofdust. When used in coating the solid content, a corresponding viscosity,a high capability to bind as well as a high pigment affinity play animportant role. As an additive to the mass rapid, uniform, loss-freedispersion, high mechanical stability and complete retention in thepaper pulp are of importance. When using the starch in spraying,corresponding content of solids, high viscosity as well as highcapability to bind are also significant.

2.2 Adhesive Industry

A major field of application is, for instance, in the adhesive industry,where the fields of application are subdivided into four areas: the useas pure starch glue, the use in starch glues prepared with specialchemicals, the use of starch as an additive to synthetic resins andpolymer dispersions as well as the use of starches as extenders forsynthetic adhesives. 90% of all starch-based adhesives are used in theproduction of corrugated board, paper sacks and bags, compositematerials for paper and aluminum, boxes and wetting glue for envelopes,stamps, etc.

2.3 Textiles and Textile Care Products

Another possible use as adjuvant and additive is in the production oftextiles and textile care products. Within the textile industry, adifferentiation can be made between the following four fields ofapplication: the use of starch as a sizing agent, i.e. as an adjuvantfor smoothing and strengthening the burring behavior for the protectionagainst tensile forces active in weaving as well as for the increase ofwear resistance during weaving, as an agent for textile improvementmainly after quality-deteriorating pretreatments, such as bleaching,dying, etc., as thickener in the production of dye pastes for theprevention of dye diffusion and as an additive for warping agents forsewing yarns.

2.4 Building Industry

Furthermore, starch may be used as an additive in building materials.One example is the production of gypsum plaster boards, in which thestarch mixed in the thin plaster pastifies with the water, diffuses atthe surface of the gypsum board and thus binds the cardboard to theboard. Other fields of application are admixing it to plaster andmineral fibers. In ready-mixed concrete, starch may be used for thedeceleration of the sizing process.

2.5 Ground Stabilization

Furthermore, the starch is advantageous for the production of means forground stabilization used for the temporary protection of groundparticles against water in artificial earth shifting. According tostate-of-the-art knowledge, combination products consisting of starchand polymer emulsions can be considered to have the same erosion- andencrustation-reducing effect as the products used so far; however, theyare considerably less expensive.

2.6 Use in Plant Protectives and Fertilizers

Another field of application is the use of starch in plant protectivesfor the modification of the specific properties of these preparations.For instance, starches are used for improving the wetting of plantprotectives and fertilizers, for the dosed release of the activeingredients, for the conversion of liquid, volatile and/or odorousactive ingredients into microcristalline, stable, deformable substances,for mixing incompatible compositions and for the prolongation of theduration of the effect due to a reduced disintegration.

2.7 Drugs, Medicine and Cosmetics Industry

Starch may also be used in the fields of drugs, medicine and in thecosmetics industry. In the pharmaceutical industry, the starch may beused as a binder for tablets or for the dilution of the binder incapsules. Furthermore, starch is suitable as disintegrant for tabletssince, upon swallowing, it absorbs fluid and after a short time itswells so much that the active ingredient is released. For qualitativereasons, medicinal flowance and dusting powders are further fields ofapplication. In the field of cosmetics, the starch may for example beused as a carrier of powder additives, such as scents and salicylicacid. A relatively extensive field of application for the starch istoothpaste.

2.8 Starch as an Additive in Coal and Briquettes

The use of starch as an additive in coal and briquettes is alsothinkable. By adding starch, coal can be quantitatively agglomeratedand/or briquetted in high quality, thus preventing prematuredisintegration of the briquettes. Barbecue coal contains between 4 and6% added starch, calorated coal between 0.1 and 0.5%. Furthermore, thestarch is suitable as a binding agent since adding it to coal andbriquette can considerably reduce the emission of toxic substances.

2.9 Processing of Ore and Coal Slurry

Furthermore, the starch may be used as a flocculant in the processing ofore and coal slurry.

2.10 Additive for Casing Materials

Another field of application is the use as an additive to processmaterials in casting. For various casting processes cores produced fromsands mixed with binding agents are needed. Nowadays, the most commonlyused binding agent is bentonite mixed with modified starches, mostlyswelling starches.

The purpose of adding starch is increased flow resistance as well asimproved binding strength. Moreover, swelling starches may fulfill moreprerequisites for the production process, such as dispersability in coldwater, rehydratisability, good mixability in sand and high capability ofbinding water.

2.11 Rubber Industry

In the rubber industry starch may be used for improving the technicaland optical quality. Reasons for this are improved surface gloss, gripand appearance. For this purpose, the starch is dispersed on the stickyrubberized surfaces of rubber substances before the cold vulcanization.It may also be used for improving the printability of rubber.

2.12 Production of Leather Substitutes

Another field of application for the modified starch is the productionof leather substitutes.

2.13 Starch in Synthetic Polymers

In the plastics market the following fields of application are emerging:the integration of products derived from starch into the processingprocess (starch is only a filler, there is no direct bond betweensynthetic polymer and starch) or, alternatively, the integration ofproducts derived from starch into the production of polymers (starch andpolymer form a stable bond).

The use of the starch as a pure filler cannot compete with othersubstances such as talcum. This situation is different when the specificstarch properties become effective and the property profile of the endproducts is thus clearly changed. One example is the use of starchproducts in the processing of thermoplastic materials, such aspolyethylene. Thereby, starch and the synthetic polymer are combined ina ratio of 1:1 by means of coexpression to form a ‘master batch’, fromwhich various products are produced by means of common techniques usinggranulated polyethylene. The integration of starch in polyethylene filmsmay cause an increased substance permeability in hollow bodies, improvedwater vapor permeability, improved antistatic behavior, improvedanti-block behavior as well as improved printability with aqueous dyes.

Another possibility is the use of the starch in polyurethane foams. Dueto the adaptation of starch derivatives as well as due to theoptimization of processing techniques, it is possible to specificallycontrol the reaction between synthetic polymers and the starch's hydroxygroups. The results are polyurethane films having the following propertyprofiles due to the use of starch: a reduced coefficient of thermalexpansion, decreased shrinking behavior, improved pressure/tensionbehavior, increased water vapor permeability without a change in wateracceptance, reduced flammability and cracking density, no drop off ofcombustible parts, no halides and reduced aging. Disadvantages thatpresently still exist are reduced pressure and impact strength.

Product development of film is not the only option. Also solid plasticsproducts, such as pots, plates and bowls can be produced by means of astarch content of more than 50%. Furthermore, the starch/polymermixtures offer the advantage that they are much easier biodegradable.

Furthermore, due to their extreme capability to bind water, starch graftpolymers have gained utmost importance. These are products having abackbone of starch and a side lattice of a synthetic monomer grafted onaccording to the principle of radical chain mechanism. The starch graftpolymers available nowadays are characterized by an improved binding andretaining capability of up to 1000 g water per g starch at a highviscosity. These super absorbers are used mainly in the hygiene field,e.g. in products such as diapers and sheets, as well as in theagricultural sector, e.g. in seed pellets.

What is decisive for the use of the novel starch modified by recombinantDNA techniques are, on the one hand, structure, water content, proteincontent, lipid content, fiber content, ashes/phosphate content,amylose/amylopectin ratio, distribution of the relative molar mass,degree of branching, granule size and shape as well as crystallization,and on the other hand, the properties resulting in the followingfeatures: flow and sorption behavior, pastification temperature,viscosity, thickening performance, solubility, paste structure,transparency, heat, shear and acid resistance, tendency toretrogradation, capability of gel formation, resistance tofreezing/thawing, capability of complex formation, iodine binding, filmformation, adhesive strength, enzyme stability, digestibility andreactivity.

What is decisive for the use of the novel starch modified by recombinantDNA techniques are, on the one hand, structure, water content, proteincontent, lipid content, fiber content, ashes/phosphate content,amylose/amylopectin ratio, distribution of the relative molar mass,degree of branching, granule size and shape as well as crystallization,and on the other hand, the properties resulting in the followingfeatures: flow and sorption behavior, pastification temperature,viscosity, thickening performance, solubility, paste structure,transparency, heat, shear and acid resistance, tendency toretrogradation, capability of gel formation, resistance tofreezing/thawing, capability of complex formation, iodine binding, filmformation, adhesive strength, enzyme stability, digestibility andreactivity.

The production of modified starch by genetically operating with atransgenic plant may modify the properties of the starch obtained fromthe plant in such a way as to render further modifications by means ofchemical or physical methods superfluous. On the other hand, thestarches modified by means of recombinant DNA techniques might besubjected to further chemical modification, which will result in furtherimprovement of the quality for certain of the above-described fields ofapplication. These chemical modifications are principally known to theperson skilled in the art. These are particularly modifications by meansof

heat treatment

acid treatment

oxidation and

esterification

leading to the formation of phosphate, nitrate, sulfate, xanthate,acetate and citrate starches. Other organic acids may also be used forthe esterification:

formation of starch ethers

starch alkyl ether, O-allyl ether, hydroxylalkyl ether, O-carboxylmethylether, N-containing starch ethers, P-containing starch ethers andS-containing starch ethers.

formation of branched starches

formation of starch graft polymers.

In principle, the nucleic acid molecules of the invention may also beused in order to produce plants in which the activity of the debranchingenzyme of the invention is elevated or reduced and in which at the sametime the activities of other enzymes involved in the starch biosynthesisare modified. In this regard, all kinds of combinations and permutationsare conceivable. For example, nucleic acid molecules encoding a proteinof the invention, or corresponding antisense-constructs may beintroduced into plant cells in which the synthesis of endogeneous GBSSI-, SSS I-, II- or GBSS II-proteins or of the su-gene is alreadyinhibited due to an antisense-effect or a mutation, or in which thesynthesis of the branching enzyme is inhibited (as described e.g.WO92/14827 or in connection with the ae mutant (Shannon and Garwood,1984, in Whistler, BeMiller and Paschall, Starch: Chemistry andTechnology, Academic Press, London, 2^(nd) edition (1984) 25-86)).

If the inhibition of the synthesis of several debranching enzymes intransformed plants is to be achieved, DNA molecules can be used fortransformation, which at the same time contain several regions inantisense-orientation encoding the respective debranching enzymes andwhich are controlled by a suitable promoter, or which encode acorresponding cosuppression RNA or a corresponding ribozyme. In suchconstructs, each sequence may alternatively be controlled by its ownpromoter or else the sequences may be transcribed as a fusion from acommon promoter. The last alternative will generally be preferred as inthis case the synthesis of the respective proteins should be inhibitedto approximately the same extent.

Furthermore, it is possible to construct DNA molecules in which, apartfrom DNA sequences encoding debranching enzymes, other DNA sequences arepresent encoding other proteins involved in the starch synthesis ormodification. These may encode an antisense RNA, a correspondingribozyme or a cosupression RNA. Again, the sequences may be connected upin series and be transcribed from a common promoter or each may betranscribed by a promoter of its own. There is no upper limit for thenumber of antisense fragments transcribed from one promoter in such aDNA molecule. The resulting transcript, however, should usually not belonger than 20 kb, preferably not longer than 5 kb.

Coding regions which are located downstream of a suitable promoter insuch DNA molecules in combination with other coding regions may bederived from DNA sequences encoding the following proteins:granule-bound starch synthases (GBSS I and II), other soluble starchsynthases (SSS I and II), branching enzymes, debranching enzymes,disproportionizing enzymes and starch phosphorylases. This enumerationmerely serves as an example. The use of other DNA sequences within theframework of such a combination is also conceivable.

By means of such constructs it is possible to inhibit the synthesis ofseveral enzymes at the same time within the plant cells transformed withthese constructs.

Furthermore, the constructs may be introduced into classical mutantswhich are defective for one or more genes of the starch biosynthesis(Shannon and Garwood, loc. cit.). These defects may be related to thefollowing proteins: granule-bound (GBSS I and II) and soluble starchsynthases (e.g. SSS I and II), branching enzymes (BE I and II),debranching enzymes (su-locus), disproportionizing enzymes and starchphosphorylases. Again, this enumeration merely serves as an example.

In order to prepare the introduction of foreign genes into higher plantsa high number of cloning vectors are at disposal, containing areplication signal for E. coli and a marker gene for the selection oftransformed bacterial cells. Examples for such vectors are pBR322, pUCseries, M13mp series, pACYC184 etc. The desired sequence may beintegrated into the vector at a suitable restriction site. The obtainedplasmid is used for the transformation of E. coli cells. Transformed E.coli cells are cultivated in a suitable medium and subsequentlyharvested and lysed. The plasmid is recovered. As an analyzing methodfor the characterization of the obtained plasmid DNA use is generallymade of restriction analysis, gel electrophoresis and otherbiochemico-molecularbiological methods. After each manipulation theplasmid DNA may be cleaved and the obtained DNA fragments may be linkedto other DNA sequences. Each plasmid DNA may be cloned into the same orin other plasmids.

In order to introduce DNA into a plant host cell a wide range oftechniques are at disposal. These techniques comprise the transformationof plant cells with T-DNA by using Agrobacterium tumefaciens orAgrobacterium rhizogenes as transformation medium, the fusion ofprotoplasts, the injection and the electroporation of DNA, theintroduction of DNA by means of the biolistic method as well as furtherpossibilities.

In the case of injection and electroporation of DNA into plant cells,there are no special demands made to the plasmids used. Simple plasmidssuch as pUC derivatives may be used. However, in case that whole plantsare to be regenerated from cells transformed in such a way, a selectablemarker gene should be present.

Depending on the method of introducing desired genes into the plantcell, further DNA sequences may be necessary. If the Ti- or Ri-plasmidis used e.g. for the transformation of the plant cell, at least theright border, more frequently, however, the right and left border of theTi- and Ri-plasmid T-DNA should be connected to the foreign gene to beintroduced as a flanking region.

If Agrobacteria are used for the transformation, the DNA which is to beintegrated must be cloned into special plasmids, namely either into anintermediate vector or into a binary vector. Due to sequences homologousto the sequences within the T-DNA, the intermediate vectors may beintegrated into the Ti- or Ri-plasmid of the Agrobacterium due tohomologous recombination. This also contains the vir-region necessaryfor the transfer of the T-DNA. Intermediate vectors cannot replicate inAgrobacteria. By means of a helper plasmid the intermediate vector maybe transferred to Agrobacterium tumefaciens (conjugation). Binaryvectors may replicate in E. coli as well as in Agrobacteria. Theycontain a selectable marker gene as well as a linker or polylinker whichis framed by the right and the left T-DNA border region. They may betransformed directly into the Agrobacteria (Holsters et al. Mol. Gen.Genet. 163 (1978), 181-187). The Agrobacterium acting as host cellshould contain a plasmid carrying a vir-region. The vir-region isnecessary for the transfer of the T-DNA into the plant cell. AdditionalT-DNA may be present. The Agrobacterium transformed in such a way isused for the transformation of plant cells.

The use of T-DNA for the transformation of plant cells was investigatedintensely and described sufficiently in EP 120 516; Hoekema, In: TheBinary Plant Vector System Offsetdrukkerij Kanters B. V., Alblasserdam(1985), Chapter V; Fraley et al., Crit. Rev. Plant. Sci., 4, 146 and Anet al. EMBO J. 4 (1985), 277-287.

For transferring the DNA into the plant cells, plant explants maysuitably be co-cultivated with Agrobacterium tumefaciens orAgrobacterium rhizogenes. From the infected plant material (e.g. piecesof leaves, stem segments, roots, but also protoplasts orsuspension-cultivated plant cells) whole plants may then be regeneratedin a suitable medium which may contain antibiotics or biozides for theselection of transformed cells. The plants obtained in such a way maythen be examined as to whether the introduced DNA is present or not.Other possibilities in order to introduce foreign DNA by using thebiolistic method or by transforming protoplasts are known to the skilledperson (cf. e.g. Willmitzer, L., 1993 Transgenic plants. In:Biotechnology, A Multi-Volume Comprehensive Treatise (H. J. Rehm, G.Reed, A. Pühler, P. Stadler, editors), Vol. 2, 627-659, VCH Weinheim-NewYork-Basel-Cambridge).

Whereas the transformation of dicotyledonous plants via TI-plasmidvector systems by means of Agrobacterium tumefaciens is wellestablished, more recent studies indicate that also monocotyledonousplants may be suitable for the transformation by means of vectors basedon Agrobacterium (Chan et al., Plant Mol. Biol. 22 (1993), 491-506; Hieiet al., Plant J. 6 (1994), 271-282, Deng et al., Science in China 33(1990), 28-34; Wilmink et al, Plant Cell Reports 11 (1992), 76-80; Mayet al., Bio/Technology 13 (1995), 486-492; Conner and Domisse; Int. J.Plant Sci. 153 (1992), 550-555; Ritchie et al., Transgenic Res. 2(1993), 252-265).

Alternative Systems for the transformation of monocotyledonous plantsare the transformation by means of a biolistic approach (Wan and Lemaux,Plant Physiol. 104 (1994), 3748; Vasil et al., Bio/Technology 11 (1993),1553-1558; Ritala et al., Plant Mol. Biol. 24 (1994), 317-325; Spenceret al., Theor. Appl. Gent. 79 (1990), 625-431), protoplasttransformation, the electroporation of partially permeabilized cells,the introduction of DNA by means of glass fibers.

There are various references in the relevant literature dealingspecifically with the transformation of maize (cf. e.g. WO95/06128, EP 0513 849; EP 0 465 875; Fromm et al., Biotechnology 8 (1990), 833-844;Gordon-Kamm et al., Plant Cell 2 (1990), 603-618; Koziel et al.,Biotechnology 11 (1993), 194-200). In EP 292 435 a method is describedby means of which fertile plants may be obtained starting frommucousless, friable granulous maize callus. In this context it wasfurthermore observed by Shillito et al. (Bio/Technology 7 (1989), 581)that for regenerating fertile plants it is necessary to start fromcallus-suspension cultures from which a culture of dividing protoplastscan be produced which is capable to regenerate to plants. After an invitro cultivation period of 7 to 8 months Shillito et al. obtain plantswith viable descendants which, however, exhibited abnormalities inmorphology and reproductivity. Prioli and Söndahl (Bio/Technology 7(1989), 589) have described how to regenerate and to obtain fertileplants from maize protoplasts of the Cateto maize inbreed line Cat100-1. The authors assume that the regeneration of protoplast to fertileplants depends on a number of various factors such as the genotype, thephysiological state of the donor-cell and the cultivation conditions Thesuccessful transformation of other cereals has by now also beendescribed, such as for barley (Wan and Lemaux, loc. cit.; Ritala et al.,loc. cit.) and for wheat (Nehra et al., Plant J. 5 (1994), 285-297).

Once the introduced DNA has been integrated in the genome of the plantcell, it usually continues to be stable there and also remains withinthe descendants of the originally transformed cell. It usually containsa selectable marker which confers resistance against biozides or againstan antibiotic such as kanamycin, G 418, bleomycin, hygromycin orphosphinotricine etc. to the transformed plant cells. The individuallyselected marker should therefore allow for a selection of transformedcells against cells lacking the introduced DNA.

The transformed cells grow in the usual way within the plant (see alsoMcCormick et al., Plant Cell Reports 5 (1986), 81-84). The resultingplants can be cultivated in the usual way and cross-bred with plantshaving the same transformed genetic heritage or another geneticheritage. The resulting hybrid individuals have the correspondingphenotypic properties. Seeds may be obtained from the plant cells.

Two or more generations should be grown in order to ensure whether thephenotypic feature is kept stably and whether it is transferred.Furthermore, seeds should be harvested in order to ensure that thecorresponding phenotype or other properties will remain.

Furthermore, the present invention relates to the use of the nucleicacid molecules of the invention for producing plants synthesizing anamylopectin starch with a modified degree of branching in comparison towildtype plants.

A further subject matter of the present invention is the use of thenucleic acid molecules of the invention or parts thereof or, as the casemay be, of the reverse complements thereof in order to identify andisolate from plants and other organisms homologous molecules encodingproteins with the enzymatic activity of a debranching enzyme orfragments of such proteins. For the term “homology”, please refer to theabove definition.

The examples illustrate the invention.

Media and solutions used:

Protoplast isolation medium (100 ml) Cellulase Onozuka R S (Meiji Seika,Japan) 800 mg Pectolyase Y 23 40 mg KNO₃ 200 mg KH₂PO₄ 136 mg K₂HPO₄ 47mg CaCl₂2H₂O 147 mg MgSO₄7H₂O 250 mg Bovine serum albumine (BSA) 20 mgGlucose 4000 mg Fructose 4000 mg Sucrose 1000 mg pH 5.8 Osmolarity 660mosm.

Protoplast washing solution 1: like protoplast isolating solution, butwithout cellulase, pectolyase and BSA

Transformation buffers: a) Glucose 0.5M MES 0.1% MgCl₂6H₂O 25 mM pH 5.8adjust to 600 mosm. b) PEG 6000-solution Glucose 0.5M MgCl₂6H₂O 100 mMHepes 20 mM pH 6.5

PEG 6000 is added to the buffer described in b) immediately prior to theuse of the solution (40% w/v PEG). The solution is filtered through a0.45 μm sterile filter.

W5 solution CaCl₂ 125 mM NaCl 150 mM KCl 5 mM Glucose 50 mM

Protoplast culture medium (indicated in mg/l) KNO₃ 3000 (NH₄)₂SO₄  500MgSO₄7H₂O  350 KH₂PO₄  400 CaCl₂2H₂O  300

Fe-EDTA and trace elements as in the Murashige-Skoog medium (Physiol.Plant, 15 (1962), 473).

m-inosite 100 Thiamine HCl 1.0 Nicotine acid amide 0.5 Pyridoxine HCl0.5 Glycine 2.0 Glucuronic acid 750 Galacturonic acid 750 Galactose 500Maltose 500 Glucose 36,000 Fructose 36,000 Sucrose 30,000 Asparagine 500Glutamine 100 Proline 300 Caseinhydrolysate 500 2,4 dichlorophenoxyacetic acid (2,4-D) 0.5 pH 5.8 Osmolarity 600 mosm.

In the examples the following methods were used:

1. Cloning Methods

For cloning in E. coli the vector pBluescript II SK (Stratagene) wasused.

2. Bacterial Strains

For the Bluescript vector and for the pUSP constructs use was made ofthe E. coli strain DH5α (Bethesda Research Laboratories, Gaithersburgh,USA). The E. coli strain XL1-Blue was used for in vivo excision.

3. Transformation of Maize

(a) Production of Protoplasts of the Cell Line DSM 6009

Protoplast Isolation

2-4 days, preferably 3 days after the last change of medium in aprotoplast suspension culture the liquid medium is pumped off and theremaining cells are washed in 50 ml protoplast washing solution 1 andsucked dry once more. 10 ml protoplast isolation medium are added to 2 gof harvested cell mass. The resuspended cells and cell aggregates areincubated at 27±2° C. for 4 to 6 hours in the darkness, while shaking itslightly (at 30 to 40 rpm).

Protoplast Purification

As soon as the release of at least 1 million protoplasts/ml has takenplace (microscopic inspection), the suspension is sifted through astainless steel or nylon sieve with a mesh size of 200 or 45 μm. Thecombination of a 100 μm and a 60 μm sieve allows for separating the cellaggregates just as well. The protoplast-containing filtrate is examinedmicroscopically. It usually contains 98-99% protoplasts. The rest areundigested single cells. Protoplast preparations with such a degree ofpurity are used for transformation experiments without additionalgradient centrifugation. The protoplasts are sedimented by means ofcentrifugation (100 UpM in the swing-out rotor (100×g, 3 minutes)). Thesupernatant is abandoned and the protoplasts are resuspended in washingsolution 1. The centrifugation is repeated and the protoplasts aresubsequently resuspended in the transformation buffer.

(b) Protoplast Transformation

The protoplasts resuspended in the transformation buffer are filled in10 ml portions into 50 ml polyallomer tubes at a titer of 0.5-1×10⁵protoplasts/ml. The DNA used for transformation is dissolved inTris-EDTA (TE) buffer solution. 20 μg plasmid DNA is added to each mlprotoplast suspension. A plasmid which provides for resistance tophosphinotricine is used as vector (cf. e.g. EP 0 513 849). After theaddition of DNA the protoplast suspension is carefully shaken in orderto homogenously distribute the DNA in the solution. Immediatelyafterwards 5 ml PEG solution is added in drops.

By carefully shaking the tubes the PEG solution is distributedhomogeneously. Afterwards further 5 ml of PEG solution are added and thehomogenous mixing is repeated. The protoplasts remain in the PEGsolution for 20 minutes at ±2° C. Afterwards the protoplasts aresedimented by centrifuging for 3 minutes (100 g; 1000 Upm). Thesupernatant is abandoned. The protoplasts are washed in 20 ml W5solution by careful shaking and are again subjected to centrifugation.Then they are resuspended in 20 ml protoplast culture medium,centrifuged anew and again resuspended in culture medium. The titer isadjusted to 6-8×10⁵ protoplasts and the protoplasts are cultivated in 3ml portions in Petri dishes (Ø60 mm, height 15 mm). The Petri dishes aresealed with parafilm and stored in darkness at 25±2° C.

(c) Protoplast Culture

During the first 2-3 weeks after the protoplast isolation andtransformation the protoplasts are cultivated without adding freshmedium. As soon as the cells regenerated from the protoplasts havedeveloped into cell aggregates with more than 20 to 50 cells, 1 ml offresh protoplast culture medium, containing sucrose as an osmotic (90g/l), is added.

(d) Selection of Transformed Maize Cells and Plant Regeneration

3-10 days after adding fresh medium the cell aggregates developed fromthe protoplasts may be plated on Agar media with 100 mg/lL-phosphinothricine. N6-medium with the vitamins of the protoplastculture medium, 90 g/l sucrose and 1.0 mg/l 2,4D is as suitable as ananalogous medium such as a medium with the macro- and micro-nutritivesalts of the MS medium (Murashige and Skoog (1962), see above).

The calli developed from stably transformed protoplasts may grow furtheron the selective medium. After 3 to 5 weeks, preferably 4 weeks thetransgenic calli may be transferred to fresh selection medium which alsocontains 100 mg/l L-phosphinothricine which, however, no longer containsauxine. Within 3 to 5 weeks approximately 50% of the transgenic maizecalli which had integrated the L-phosphinothricine-acetyl-transferasegene into their genome, start to differentiate into plants on thismedium in the presence of L-phosphinothricine.

(e) Growing of Transgenic Regenerative Plants

The embryogenical transformed maize tissue is cultivated on hormone-freeN6-medium (Chu C. C. et al., Sci. Sin. 16 (1975), 659) in the presenceof 5×10⁻⁴ M L-phosphinothricine. On this medium maize embryos, whichexpress the phosphinothricine-acetyl-transferase gene (PAT gene) in asufficiently strong manner, develop into plants. Non-transformed embryosor such with only a very weak PAT activity die down. As soon as theleaves of the in-vitro plants have reached a length of 4 to 6 mm, theymay be transferred into soil. After washing off the Agar residues at theroots the plants are planted into a mixture of clay, sand, vermiculiteand potting soil with the ratio 3:1:1:1 and adapted to the soil cultureat 90-100% of relative atmospheric humidity during the first 3 daysafter planting. The growing is carried out in a climate chamber with a14 hour light period of approximately 25000 lux at the height of theplant at a day/night temperature of 23±1/17±1° C. The adapted plants arecultivated at an 65±5% atmospheric humidity.

4. Radioactive Marking of DNA Fragments

The radioactive marking of DNA fragments was carried out by means of aDNA-Random Primer Labeling Kits by Boehringer (Germany) according to themanufacturer's instructions.

EXAMPLE 1 Cloning of a cDNA Encoding a Novel Debranching Enzyme from Zeamays

In order to isolate cDNA molecules encoding a starch debranching enzymefrom maize, a cDNA library was constructed within the vector LambdaZAPII (Stratagene) starting from polyA⁺ RNA from maize leaves and packedinto phage heads. E. coli cells of the XL1 Blue strain were subsequentlyinfected with the phages containing the cDNA fragments (1×10⁶ pfu) andplated on medium in Petri dishes with a densitiy of approximately 30,000per 75 cm². After an 8-hour incubation, nitrocellulose membranes wereput on the lysed bacteria and removed after one minute. The filters werefirst incubated in 0.2 M NaOH; 1.5 M NaCl for 2 minutes and then in 0.4M Tris/HCl pH 7.5 for 2 minutes and finally in 2×SSC for 2 minutes.After drying and fixing the DNA by means of UV crosslinking, the filterswere incubated in hybridization buffer for 3 hours at 42° C. before aradioactively labeled probe was added.

As a probe, use was made of a cDNA from potato encoding a debranchingenzyme from potato (see SEQ ID No. 3). This cDNA had beforehand beenisolated by means of degenerated oligonucleotides which had been derivedfrom the partial amino acid sequence of a debranching enzyme frompotato.

The hybridization was carried out in 2×SSC, 10×Dehnhardt's solution; 50mM Na₂HPO₄, pH 7.2; 0.2% SDS; 5 mM EDTA and 250 μg/ml denatured herringsperm DNA at 48° C.

Hybridizing phage clones were singled out and further purified by meansof standard methods. By means of in vivo excision E. coli clones werederived from positive phage clones. The E. coli clones contained adouble-stranded pBluescript plasmid with the respective cDNA insertions.After examining the size and the restriction pattern of the insertion,plasmid DNA was isolated from suitable clones. pREM-53, a plasmidisolated in such a way, contained an insertion of 1195 bp.

EXAMPLE 2 Sequence Analysis of the cDNA Insert of the pREM-53 Plasmid

In the case of the plasmid pREM-53, which was isolated as described inExample 1, the nucleotide sequence of the cDNA insert was determined ina standard routine by means of the didesoxynucleotide-method (Sanger etal., Proc. Natl. Acad. Sci. USA 74 (1977), 5463-5467). The insert has alength of 1995 bp. The nucleotide sequence and the corresponding aminoacid sequence are indicated under Seq ID No. 1. Homology comparisonsshowed that the encoded protein was a novel debranching enzyme frommaize.

The nucleotide sequence depicted under SEQ ID No. 1 represents a partialcDNA encoding a so far unknown debranching enzyme from maize. By meansof this sequence it is possible to isolate a complete cDNA sequence or agenomic sequence from suitable cDNA or genomic libraries by means ofstandard techniques.

                   #             SEQUENCE LISTING(1) GENERAL INFORMATION:    (iii) NUMBER OF SEQUENCES: 4(2) INFORMATION FOR SEQ ID NO: 1:      (i) SEQUENCE CHARACTERISTICS:          (A) LENGTH: 1993 base  #pairs           (B) TYPE: nucleotide          (C) STRANDEDNESS: double           (D) TOPOLOGY: linear    (ii) MOLECULE TYPE: cDNA to mRNA    (iii) HYPOTHETICAL: NO    (iv) ANTI-SENSE: NO     (vi) ORIGINAL SOURCE:          (A) ORGANISM: Zea mays           (F) TISSUE TYPE: Blattg#ewebe     (ix) FEATURE:           (A) NAME/KEY: CDS          (B) LOCATION:1..1675    (xi) SEQUENCE DESCRIPTION: SEQ ID NO:  #1:GGC ACG AGG TCA AAA CTC CCT CCA GGG TCA GA#T TTG CAA CAA GCT GCA       48Gly Thr Arg Ser Lys Leu Pro Pro Gly Ser As #p Leu Gln Gln Ala Ala   1                #5                   #10                   #15ATT GTG GCT ATT CAG GAA GAG GAC CCT TAT AA#T TGG GGG TAT AAC CCT       96Ile Val Ala Ile Gln Glu Glu Asp Pro Tyr As #n Trp Gly Tyr Asn Pro              20     #              25     #              30GTG GTT TGG GGC GTT CCA AAA GGA AGC TAT GC#A AGT AAC CCA GAT GGT      144Val Val Trp Gly Val Pro Lys Gly Ser Tyr Al #a Ser Asn Pro Asp Gly          35         #          40         #          45CCA AGT CGT ATC ATT GAG TAC CGG CTG ATG GT#G CAG GCC TTG AAT CGC      192Pro Ser Arg Ile Ile Glu Tyr Arg Leu Met Va #l Gln Ala Leu Asn Arg      50             #      55             #      60TTA GGT CTT CGA GTT GTC ATG GAT GTT GTA TA#C AAT CAT CTA TAC TCA      240Leu Gly Leu Arg Val Val Met Asp Val Val Ty #r Asn His Leu Tyr Ser  65                 #  70                 #  75                 #  80AGT GGC CCT TTT GCC ATC ACT TCC GTG CTT GA#C AAG ATT GTA CCT GGA      288Ser Gly Pro Phe Ala Ile Thr Ser Val Leu As #p Lys Ile Val Pro Gly                 85  #                 90  #                 95TAC TAC CTC AGA AGG GAC TCT AAT GGT CAG AC#T GAG AAC AGC GCG GCT      336Tyr Tyr Leu Arg Arg Asp Ser Asn Gly Gln Th #r Glu Asn Ser Ala Ala            100       #           105       #           110GTG AAC AAT ACA GCA AGT GAG CAT TTC ATG GT#T GAT AGA TTA ATC GTG      384Val Asn Asn Thr Ala Ser Glu His Phe Met Va #l Asp Arg Leu Ile Val        115           #       120           #       125GAT GAC CTT CTG AAT TGG GCA GTA AAT TAC AA#A GTT GAC GGG TTC AGA      432Asp Asp Leu Leu Asn Trp Ala Val Asn Tyr Ly #s Val Asp Gly Phe Arg    130               #   135               #   140TTT GAT CTA ATG GGA CAT ATC ATG AAA AAG AC#A ATG ATT AGA GCA AAA      480Phe Asp Leu Met Gly His Ile Met Lys Lys Th #r Met Ile Arg Ala Lys145                 1 #50                 1 #55                 1 #60TCG GCT CTT CAA AGC CTT ACA ATT GAT GAA CA#T GGA GTA GAT GGT TCA      528Ser Ala Leu Gln Ser Leu Thr Ile Asp Glu Hi #s Gly Val Asp Gly Ser                165   #               170   #               175AAG ATA TAC TTG TAT GGT GAA GGA TGG AAC TT#C GGT GAA GTT GCG GAA      576Lys Ile Tyr Leu Tyr Gly Glu Gly Trp Asn Ph #e Gly Glu Val Ala Glu            180       #           185       #           190AAT CAA CGT GGG ATA AAT GGA TCC CAG CTA AA#T ATG AGT GGC ACT GGG      624Asn Gln Arg Gly Ile Asn Gly Ser Gln Leu As #n Met Ser Gly Thr Gly        195           #       200           #       205ATT GGT AGT TTC AAC GAT AGA ATC CGT GAT GC#T ATA AAT GGT GGC AGT      672Ile Gly Ser Phe Asn Asp Arg Ile Arg Asp Al #a Ile Asn Gly Gly Ser    210               #   215               #   220CCG TTT GGG AAT CCA CTG CAA CAA GGT TTC TC#T ACT GGA TTG TTC TTA      720Pro Phe Gly Asn Pro Leu Gln Gln Gly Phe Se #r Thr Gly Leu Phe Leu225                 2 #30                 2 #35                 2 #40GAG CCA AAT GGA TTT TAT CAG GGC AAT GAA AC#A GAG ACA AGG CTC ACG      768Glu Pro Asn Gly Phe Tyr Gln Gly Asn Glu Th #r Glu Thr Arg Leu Thr                245   #               250   #               255CTT GCT ACA TAC GCT GAC CAT ATA CAG ATT GG#A TTA GCT GGC AAT TTG      816Leu Ala Thr Tyr Ala Asp His Ile Gln Ile Gl #y Leu Ala Gly Asn Leu            260       #           265       #           270AAG GAC TAT GTA GTT ATA TCT CAT ACT GGA GA#A GCT AGA AAA GGA TCT      864Lys Asp Tyr Val Val Ile Ser His Thr Gly Gl #u Ala Arg Lys Gly Ser        275           #       280           #       285GAA ATT CGC ACC TTC GAT GGC TCA CCA GTT GG#C TAT GCT TCA TCC CCT      912Glu Ile Arg Thr Phe Asp Gly Ser Pro Val Gl #y Tyr Ala Ser Ser Pro    290               #   295               #   300ATA GAA ACA ATA AAC TAC GCC TCT GCT CAT GA#C AAT GAA ACA CTA TTT      960Ile Glu Thr Ile Asn Tyr Ala Ser Ala His As #p Asn Glu Thr Leu Phe305                 3 #10                 3 #15                 3 #20GAT ATT ATT AGT CTA AAG ACT CCG ATG GAC CT#C TCA ATT GAC GAG CGA     1008Asp Ile Ile Ser Leu Lys Thr Pro Met Asp Le #u Ser Ile Asp Glu Arg                325   #               330   #               335TGC AGG ATA AAT CAT TTG TCC ACA AGC ATG AT#T GCA TTA TCC CAG GGA     1056Cys Arg Ile Asn His Leu Ser Thr Ser Met Il #e Ala Leu Ser Gln Gly            340       #           345       #           350ATA CCA TTT TTT CAT GCT GGT GAT GAG ATA CT#A CGA TCT AAG TCG CTT     1104Ile Pro Phe Phe His Ala Gly Asp Glu Ile Le #u Arg Ser Lys Ser Leu        355           #       360           #       365GAT CGA GAT TCA TAT GAC TCT GGT GAT TGG TT#T AAC AAG ATT GAT TTT     1152Asp Arg Asp Ser Tyr Asp Ser Gly Asp Trp Ph #e Asn Lys Ile Asp Phe    370               #   375               #   380ACC TAT GAA ACA AAC AAT TGG GGT GTT GGG CT#T CCA CCA AGA GAA AAG     1200Thr Tyr Glu Thr Asn Asn Trp Gly Val Gly Le #u Pro Pro Arg Glu Lys385                 3 #90                 3 #95                 4 #00AAC GAA GGG AGC TGG CCT TTG ATG AAG CCA AG#A TTG GAG AAC CCG TCG     1248Asn Glu Gly Ser Trp Pro Leu Met Lys Pro Ar #g Leu Glu Asn Pro Ser                405   #               410   #               415TTC AAA CCT GCA AAA CAT GAC ATT ATT GCT GC#C TTA GAC AAA TTT ATT     1296Phe Lys Pro Ala Lys His Asp Ile Ile Ala Al #a Leu Asp Lys Phe Ile            420       #           425       #           430GAT ATC CTC AAG ATC AGA TAC TCA TCA CCT CT#C TTT CGC CTA ACT ACA     1344Asp Ile Leu Lys Ile Arg Tyr Ser Ser Pro Le #u Phe Arg Leu Thr Thr        435           #       440           #       445GCA AGT GAT ATT GTG CAA AGG GTT CAC TTT CA#C AAC ACA GGG CCC TCC     1392Ala Ser Asp Ile Val Gln Arg Val His Phe Hi #s Asn Thr Gly Pro Ser    450               #   455               #   460TTG GTT CCA GGA GTT ATT GTC ATG AGC ATC GA#A GAT GCA CGA AAT GAT     1440Leu Val Pro Gly Val Ile Val Met Ser Ile Gl #u Asp Ala Arg Asn Asp465                 4 #70                 4 #75                 4 #80AGG CAT GAT ATG GCC CAG ATA GAT GAA ACA TT#C TCT TGT GTC GTT ACA     1488Arg His Asp Met Ala Gln Ile Asp Glu Thr Ph #e Ser Cys Val Val Thr                485   #               490   #               495GTC TTC AAT GTA TGT CCG TAC GAA GTG TCT AT#A GAA ATC CCT GAT CTT     1536Val Phe Asn Val Cys Pro Tyr Glu Val Ser Il #e Glu Ile Pro Asp Leu            500       #           505       #           510GCA TCA CTG CGG CTT CAG TTG CAT CCA GTG CA#G GTG AAT TCA TCG GAT     1584Ala Ser Leu Arg Leu Gln Leu His Pro Val Gl #n Val Asn Ser Ser Asp        515           #       520           #       525GCG TTA GCC AGG CAG TCT GCG TAC GAC ACC GC#C ACA GGT CGA TTC ACC     1632Ala Leu Ala Arg Gln Ser Ala Tyr Asp Thr Al #a Thr Gly Arg Phe Thr    530               #   535               #   540GTG CCG AAA AGG ACA GCA GCA GTG TTC GTG GA #A CCC AGG TGC T           #1675 Val Pro Lys Arg Thr Ala Ala Val Phe Val Gl #u Pro Arg Cys545                 5 #50                 5 #55GATGGATGCC TTTCGCTAGC GAGCAAGTGC ATTCGGCATC CAAGTCGAAG CA#AACGAATG   1735AAATAAGAGA AGGCCATCGA ATAAAACGAA GTATATAAAT AGATTGAATA AG#ACGTTGCC   1795CAAGTTGCCA AGGCACGCTT TGCCATATGT ATGCGTTGAA AAATAAATAA AT#AAATAAAT   1855AAATGATGTT ATAGAGGTAC AAAAGCATTG GAACATTTCT TTATAGAGGT GA#ACCACCCT   1915ATTTTCCAGT TTCCATGTGT GAATTGTGAT TAGCATATGT ATGGAATAAT AA#TATAAATT   1975 AATTTTATGC AAAAAAAA              #                  #                   #1993 (2) INFORMATION FOR SEQ ID NO: 2:     (i) SEQUENCE CHARACTERISTICS:           (A) LENGTH: 558 amino #acids           (B) TYPE: amino acid           (D) TOPOLOGY: linear    (ii) MOLECULE TYPE: protein    (xi) SEQUENCE DESCRIPTION: SEQ ID NO:  #2:Gly Thr Arg Ser Lys Leu Pro Pro Gly Ser As #p Leu Gln Gln Ala Ala  1               5  #                 10  #                 15Ile Val Ala Ile Gln Glu Glu Asp Pro Tyr As #n Trp Gly Tyr Asn Pro             20      #             25      #             30Val Val Trp Gly Val Pro Lys Gly Ser Tyr Al #a Ser Asn Pro Asp Gly         35          #         40          #         45Pro Ser Arg Ile Ile Glu Tyr Arg Leu Met Va #l Gln Ala Leu Asn Arg     50              #     55              #     60Leu Gly Leu Arg Val Val Met Asp Val Val Ty #r Asn His Leu Tyr Ser 65                  # 70                  # 75                  # 80Ser Gly Pro Phe Ala Ile Thr Ser Val Leu As #p Lys Ile Val Pro Gly                 85  #                 90  #                 95Tyr Tyr Leu Arg Arg Asp Ser Asn Gly Gln Th #r Glu Asn Ser Ala Ala            100       #           105       #           110Val Asn Asn Thr Ala Ser Glu His Phe Met Va #l Asp Arg Leu Ile Val        115           #       120           #       125Asp Asp Leu Leu Asn Trp Ala Val Asn Tyr Ly #s Val Asp Gly Phe Arg    130               #   135               #   140Phe Asp Leu Met Gly His Ile Met Lys Lys Th #r Met Ile Arg Ala Lys145                 1 #50                 1 #55                 1 #60Ser Ala Leu Gln Ser Leu Thr Ile Asp Glu Hi #s Gly Val Asp Gly Ser                165   #               170   #               175Lys Ile Tyr Leu Tyr Gly Glu Gly Trp Asn Ph #e Gly Glu Val Ala Glu            180       #           185       #           190Asn Gln Arg Gly Ile Asn Gly Ser Gln Leu As #n Met Ser Gly Thr Gly        195           #       200           #       205Ile Gly Ser Phe Asn Asp Arg Ile Arg Asp Al #a Ile Asn Gly Gly Ser    210               #   215               #   220Pro Phe Gly Asn Pro Leu Gln Gln Gly Phe Se #r Thr Gly Leu Phe Leu225                 2 #30                 2 #35                 2 #40Glu Pro Asn Gly Phe Tyr Gln Gly Asn Glu Th #r Glu Thr Arg Leu Thr                245   #               250   #               255Leu Ala Thr Tyr Ala Asp His Ile Gln Ile Gl #y Leu Ala Gly Asn Leu            260       #           265       #           270Lys Asp Tyr Val Val Ile Ser His Thr Gly Gl #u Ala Arg Lys Gly Ser        275           #       280           #       285Glu Ile Arg Thr Phe Asp Gly Ser Pro Val Gl #y Tyr Ala Ser Ser Pro    290               #   295               #   300Ile Glu Thr Ile Asn Tyr Ala Ser Ala His As #p Asn Glu Thr Leu Phe305                 3 #10                 3 #15                 3 #20Asp Ile Ile Ser Leu Lys Thr Pro Met Asp Le #u Ser Ile Asp Glu Arg                325   #               330   #               335Cys Arg Ile Asn His Leu Ser Thr Ser Met Il #e Ala Leu Ser Gln Gly            340       #           345       #           350Ile Pro Phe Phe His Ala Gly Asp Glu Ile Le #u Arg Ser Lys Ser Leu        355           #       360           #       365Asp Arg Asp Ser Tyr Asp Ser Gly Asp Trp Ph #e Asn Lys Ile Asp Phe    370               #   375               #   380Thr Tyr Glu Thr Asn Asn Trp Gly Val Gly Le #u Pro Pro Arg Glu Lys385                 3 #90                 3 #95                 4 #00Asn Glu Gly Ser Trp Pro Leu Met Lys Pro Ar #g Leu Glu Asn Pro Ser                405   #               410   #               415Phe Lys Pro Ala Lys His Asp Ile Ile Ala Al #a Leu Asp Lys Phe Ile            420       #           425       #           430Asp Ile Leu Lys Ile Arg Tyr Ser Ser Pro Le #u Phe Arg Leu Thr Thr        435           #       440           #       445Ala Ser Asp Ile Val Gln Arg Val His Phe Hi #s Asn Thr Gly Pro Ser    450               #   455               #   460Leu Val Pro Gly Val Ile Val Met Ser Ile Gl #u Asp Ala Arg Asn Asp465                 4 #70                 4 #75                 4 #80Arg His Asp Met Ala Gln Ile Asp Glu Thr Ph #e Ser Cys Val Val Thr                485   #               490   #               495Val Phe Asn Val Cys Pro Tyr Glu Val Ser Il #e Glu Ile Pro Asp Leu            500       #           505       #           510Ala Ser Leu Arg Leu Gln Leu His Pro Val Gl #n Val Asn Ser Ser Asp        515           #       520           #       525Ala Leu Ala Arg Gln Ser Ala Tyr Asp Thr Al #a Thr Gly Arg Phe Thr    530               #   535               #   540Val Pro Lys Arg Thr Ala Ala Val Phe Val Gl #u Pro Arg Cys545                 5 #50                 5 #55(2) INFORMATION FOR SEQ ID NO: 3:      (i) SEQUENCE CHARACTERISTICS:          (A) LENGTH: 492 base  #pairs           (B) TYPE: nucleotide          (C) STRANDEDNESS: single           (D) TOPOLOGY: linear    (ii) MOLECULE TYPE: cDNA to mRNA    (iii) HYPOTHETICAL: NO    (iv) ANTI-SENSE: NO     (vi) ORIGINAL SOURCE:          (A) ORGANISM: Solanum t #uberosum          (B) STRAIN: Berolina           (F) TISSUE TYPE: tuber    (ix) FEATURE:           (A) NAME/KEY: CDS          (B) LOCATION:1..492           (D) OTHER INFORMATION:/pro#duct= “debranching enzyme           (R-enzyme)”    (xi) SEQUENCE DESCRIPTION: SEQ ID NO:  #3:TCT GCT GAT GGC AAG TGG ACA TTA TTA GTT AA#T CTT GAT TCT GAT GAT       48Ser Ala Asp Gly Lys Trp Thr Leu Leu Val As #n Leu Asp Ser Asp Asp    560               #   565               #   570GTA AAA CCT GAA GGC TGG GAT AAT CTA CAA GA#C GTG AAG CCA AAT CTT       96Val Lys Pro Glu Gly Trp Asp Asn Leu Gln As #p Val Lys Pro Asn Leu575                 5 #80                 5 #85                 5 #90CTT TCC TTT TCT GAT GTC AGC ATC TAT GAG CT#G CAT GTT AGA GAT TTC      144Leu Ser Phe Ser Asp Val Ser Ile Tyr Glu Le #u His Val Arg Asp Phe                595   #               600   #               605ACT GCC AGT GAC CCT ACT GTG TCT CAT GAA TT#T CAG GCC GGT TAT CTC      192Thr Ala Ser Asp Pro Thr Val Ser His Glu Ph #e Gln Ala Gly Tyr Leu            610       #           615       #           620GCC CCT TCC ACG TCG CAG GCA TCA GCT GGT GT#C CAA CAT TTG AAA AGA      240Ala Pro Ser Thr Ser Gln Ala Ser Ala Gly Va #l Gln His Leu Lys Arg        625           #       630           #       635TTA TCA AGT GCT GGT ATC ACT CAT GTC CAC CT#G TGG CCA ACC TAT CAA      288Leu Ser Ser Ala Gly Ile Thr His Val His Le #u Trp Pro Thr Tyr Gln    640               #   645               #   650TTT GCT GGT GTC GAA GAT GAG AAA CAT AAA TG#G AAG TAT ACA GAT ATC      336Phe Ala Gly Val Glu Asp Glu Lys His Lys Tr #p Lys Tyr Thr Asp Ile655                 6 #60                 6 #65                 6 #70GAG AAA CTC AAC TCT TTT CCA CCA GAT TCT GA#G GAG CAG CAG GCT CTT      384Glu Lys Leu Asn Ser Phe Pro Pro Asp Ser Gl #u Glu Gln Gln Ala Leu                675   #               680   #               685ATC ACA GCC ATC CAA GAT GAA GAT GGC TAT AA#T TGG GGG TAT AAT CCT      432Ile Thr Ala Ile Gln Asp Glu Asp Gly Tyr As #n Trp Gly Tyr Asn Pro            690       #           695       #           700GTT CTC TGG GGA GTT CCA AAG GGA AGC TAT GC#T GGT AAT GCA AAT GGT      480Val Leu Trp Gly Val Pro Lys Gly Ser Tyr Al #a Gly Asn Ala Asn Gly        705           #       710           #       715CCT TGT CGT ATC             #                   #                  #      492 Pro Cys Arg Ile     720 (2) INFORMATION FOR SEQ ID NO: 4:     (i) SEQUENCE CHARACTERISTICS:           (A) LENGTH: 164 amino #acids           (B) TYPE: amino acid           (D) TOPOLOGY: linear    (ii) MOLECULE TYPE: protein    (xi) SEQUENCE DESCRIPTION: SEQ ID NO:  #4:Ser Ala Asp Gly Lys Trp Thr Leu Leu Val As #n Leu Asp Ser Asp Asp  1               5  #                 10  #                 15Val Lys Pro Glu Gly Trp Asp Asn Leu Gln As #p Val Lys Pro Asn Leu             20      #             25      #             30Leu Ser Phe Ser Asp Val Ser Ile Tyr Glu Le #u His Val Arg Asp Phe         35          #         40          #         45Thr Ala Ser Asp Pro Thr Val Ser His Glu Ph #e Gln Ala Gly Tyr Leu     50              #     55              #     60Ala Pro Ser Thr Ser Gln Ala Ser Ala Gly Va #l Gln His Leu Lys Arg 65                  # 70                  # 75                  # 80Leu Ser Ser Ala Gly Ile Thr His Val His Le #u Trp Pro Thr Tyr Gln                 85  #                 90  #                 95Phe Ala Gly Val Glu Asp Glu Lys His Lys Tr #p Lys Tyr Thr Asp Ile            100       #           105       #           110Glu Lys Leu Asn Ser Phe Pro Pro Asp Ser Gl #u Glu Gln Gln Ala Leu        115           #       120           #       125Ile Thr Ala Ile Gln Asp Glu Asp Gly Tyr As #n Trp Gly Tyr Asn Pro    130               #   135               #   140Val Leu Trp Gly Val Pro Lys Gly Ser Tyr Al #a Gly Asn Ala Asn Gly145                 1 #50                 1 #55                 1 #60Pro Cys Arg Ile

What is claimed is:
 1. An isolated nucleic acid molecule comprising aregulatory element operably linked to a part of a nucleic acid sequencein antisense orientation thereto, wherein the nucleic acid sequence isselected from the group consisting of: (a) a nucleic acid sequenceencoding a protein comprising the amino acid sequence of SEQ ID NO: 2;(b) a nucleic acid sequence that is SEQ ID NO: 1; and (c) a nucleic acidsequence that has more than 90% sequence identity to (a)or(b); whereinthe nucleic acid molecule is sufficient to reduce the expression of adebranching enzyme in a plant cell.
 2. A host cell comprising thenucleic acid molecule of claim
 1. 3. The host cell according to claim 2,wherein said nucleic acid sequence has a sequence identity of more than95% to (a) or (b).
 4. The host cell according to claim 2, wherein thenucleic acid sequence is selected from the group consisting of: (a) anucleic acid sequence encoding a protein comprising the amino acidsequence of SEQ ID NO: 2; and (b) a nucleic acid sequence that is SEQ IDNO:
 1. 5. The host cell according to any one of claim 2, 3, or 4,wherein the host cell is a plant cell.
 6. A transgenic plant comprisingthe plant cell of claim
 5. 7. The transgenic plant of claim 6, whereinthe plant is a maize plant.
 8. A propagation material of a plant,wherein the propagation material comprises the plant cell of claim
 5. 9.The nucleic acid molecule of claim 1, wherein said nucleic acid sequencehas a sequence identity of more than 95% to (a) or (b).
 10. The nucleicacid molecule of claim 1, wherein the nucleic acid sequence is selectedfrom the group consisting of: (a) a nucleic acid sequence encoding aprotein comprising the amino acid sequence of SEQ ID NO: 2; and (b) anucleic acid sequence that is SEQ ID NO: 1.